Plant MITE

SE2710182

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3515
Setaria italica
SE2710182
Tc1/Mariner
St21
scaffold_1:32950436-32950698
TA
TACTCCCTCCGTCCAGAAATGATAGGCGTATTTTGAT

Secondary structure and sequence

TSD TIR

5'

3'

                                 T   CAATCAAAA     A -T  ACAAACTTTGACCAACAATTAGTTAAATTATAAGCATATTTAGTATATAAATTTTGCATCAATATATCTGTAGTTAA
TACTCCCTCCGTCCAGAAATGATAGGCGTATTT GAT         GTTAA C  TT                                                                             
||||||||||||||||||||||||||||||||| |||         ||||| |  ||                                                                              
ATGAGGGAGGTAGGTCTTTACTATTCGCATAAA TTA         TTTCA G  AG                                                                             
                                 T   ---ACCCCC     - AA  TTTCATCTAAAACTGAGAATTAAAGAGAATATTATATTACAGTTAGCGATGTTTGAGTTACAGTAGAGTTTTATTTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2710182

TACTCCCTCCGTCCAGAAATGATAGGCGTATTTTGATCAATCAAAAGTTAAACTTTACAAACTTTGACCAACAATTAGTTAAATTATAAGCATATTTAGTATATAAATTTTGCATCAATATATCTGTAGTTAAATTTATTTTGAGATGACATTGAGTTTGTAGCGATTGACATTATATTATAAGAGAAATTAAGAGTCAAAATCTACTTTGAAAGACTTTCCCCCAATTTAAATACGCTTATCATTTCTGGATGGAGGGAGTA

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