Plant MITE

SE2750184

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3517
Setaria italica
SE2750184
PIF/harbinger
To7
scaffold_7:22641092-22641379
TTA
AGGCCATTCTTAATGGAAGTTTCATGGACA

Secondary structure and sequence

TSD TIR

5'

3'

TT               -           GA  ATAAA    --CTT            --------------TTTT     C     A  ---  ATTTATGAGGTGAGAGAATAAAATAGTTTTATGTGGATGAAACCATATGTACACTGTT
  AGGCCATTCTTAATG GAAGTTTCATG  CA     TGAG     CCACGTAAGCAA                  GATGA ATAGC CA   CT                                                          
  ||||||||||||||| |||||||||||  ||     ||||     ||||||||||||                  ||||| ||||| ||   ||                                                           
  TCCGGTAAGAGTTAC TTTCAAAGTAT  GT     ACTT     GGTGTATTCGTT                  CTACT TATCG GT   TT                                                          
AT               G           AA  ACAAA    CTTAC            CTTATATAAATCAAGTAT     T     A  ATG  ACGTATCAAAGTAGAAAACAATAAAAGTTCCGATGCACATTCTGTGTTTCAATAACCT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2750184

TTAGGCCATTCTTAATGGAAGTTTCATGGACAATAAATGAGCTTCCACGTAAGCAATTTTGATGACATAGCACACTATTTATGAGGTGAGAGAATAAAATAGTTTTATGTGGATGAAACCATATGTACACTGTTTCCAATAACTTTGTGTCTTACACGTAGCCTTGAAAATAACAAAAGATGAAACTATGCATTGTATGAGCTATTTCATCTATGAACTAAATATATTCTTGCTTATGTGGCATTCTTCAAAACATGAATATGAAACTTTGCATTGAGAATGGCCTTA

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