SE2710186

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3519
  • Setaria italica
  • SE2710186
  • Tc1/Mariner
  • St3
  • scaffold_9:46537719-46537870
  • TA
  • TACTCCCTCCGTCCCAAATTGTAGGTCGTTTTGGCATTTCTAGATTCATAAGTTTTACTATGGATCTAGACATA

Secondary structure and sequence

TSD    TIR
5'



3' 
                                                  A     A     G       C   AG
TACTCCCTCCGTCCCAAATTGTAGGTCGTTTTGGCATTTCTAGATTCATA GTTTT CTATG ATCTAGA ATA  
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||| |||   
ATGAGGGAGGCAGGGTTTAACATCCAGCAAAACCGTAAAGATCTAAGTAT TAAAA GATAC TGGATCT TAT  
                                                  A     C     G       A   GT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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