Plant MITE

SE2710187

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3520
Setaria italica
SE2710187
Tc1/Mariner
St8
scaffold_8:21661363-21661625
TA
TACTCCCTCCGTTCCAAATTATAAGTCATTCCAACTTTCTTGGAGAGTCAAAGCAT

Secondary structure and sequence

TSD TIR

5'

3'

                                                    G   CTCAA           T     CAATAAA  GCTAACATTCATGATATCAAATAGGTACCATTAGTTTCTTCATT
TACTCCCTCCGTTCCAAATTATAAGTCATTCCAACTTTCTTGGAGAGTCAAA CAT     GTTTGACCAAA TTATA       GT                                            
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||     ||||||||||| |||||       ||                                            A
ATGAGGGAGGCAAGGTTTAATATTCAGTAAGGTTGAAAGAACCTCTCAGTTT GTA     CAAACTGGTTT AATAT       AG                                            
                                                    G   AAATA           T     CTCTTTT  TATTTTCAAATATCGTGGCTTATCTATATGATACTTTTATATAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2710187

TACTCCCTCCGTTCCAAATTATAAGTCATTCCAACTTTCTTGGAGAGTCAAAGCATCTCAAGTTTGACCAAATTTATACAATAAAGTGCTAACATTCATGATATCAAATAGGTACCATTAGTTTCTTCATTAAATATATTTTCATAGTATATCTATTCGGTGCTATAAACTTTTATGATTTTCTCTATAATTTTGGTCAAACATAAAATGGTTTGACTCTCCAAGAAAGTTGGAATGACTTATAATTTGGAACGGAGGGAGTA

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