SE2750188

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3521
  • Setaria italica
  • SE2750188
  • PIF/harbinger
  • To1
  • scaffold_9:8101459-8101810
  • TTA
  • AGGGGGTGTTTGGG

Secondary structure and sequence

TSD    TIR
5'



3'
TT     G        AAACACC       G       CC                                 T         A         C             CA   GGA  -A                                       G   T A   T     GCTA
  AGGGG TGTTTGGG       TGTTAAA TTTAACA  TGTCACATCGGATGTTTGGATGCTAATTAGGAG ACTAAACAT AGCTAATTA AAAACTAATTGCA  GAT   GT  TAATTCGCGAGACGAATCTATTAAGCCTAATTAGTCCAT ATT G CAA GTGGT    
  ||||| ||||||||       ||||||| |||||||  ||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||  |||   ||  ||||||||||||||||||||||||||||||||||||||| ||| | ||| |||||    C
  TCCCC ACAAACCT       ACGATTT AAATTGT  ACAGTGTAGCCTACAAACCTACGATTAATCCTC TGATTTGTA TCGATTAAT TTTTGATTAACGT  TTG   CA  ATTAAGCGCTCTGCTTAGATAATTCGGATTAATTAGGTA TAA C GTT TACCA    
AT     G        ATGCTCC       G       -C                                 C         C         A             -C   GAA  CG                                       G   T -   -     ATGA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End