Plant MITE

SE2730189

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3522
Setaria italica
SE2730189
hAT
Hat14
scaffold_6:7426764-7427054
CTCATTGG
CATTGGTAGGGATGAAA

Secondary structure and sequence

TSD TIR

5'

3'

CT  T  -            A  GA   GATACGAACGGATATTGCGGATATAAATACAGATAGTTATTTTTTTTGGATCGAATTCGGATACGAATAGTGACAAGATGTATCGAATATTGATATTCATCCTATTCGGATCTTAGGAA
  CA TG GTAGGGATGAAA CG  TCG                                                                                                                       
  || || |||||||||||| ||  |||                                                                                                                       T
  GT AC CATCCCTACTTT AC  CAT                                                                                                                       
 G  T  T            C  --   ACCTATAATAGATAGGCAAGCAGGCTGGCTTTTCCAAGTCTGTGAGTTTACCATTCAAGCATAGGCTTAGGCCTGTAAGTTATAGGCATGGTATAAGCTTAGGCCTATGAGTTTCAACG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2730189

CTCATTGGTAGGGATGAAAACGGATCGGATACGAACGGATATTGCGGATATAAATACAGATAGTTATTTTTTTTGGATCGAATTCGGATACGAATAGTGACAAGATGTATCGAATATTGATATTCATCCTATTCGGATCTTAGGAATGCAACTTTGAGTATCCGGATTCGAATATGGTACGGATATTGAATGTCCGGATTCGGATACGAACTTACCATTTGAGTGTCTGAACCTTTTCGGTCGGACGAACGGATAGATAATATCCATACCACTTTCATCCCTACTCATTGG

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