SE2750197

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3530
  • Setaria italica
  • SE2750197
  • PIF/harbinger
  • To29
  • scaffold_5:4626078-4626445
  • TGA
  • AGGCCCCGTTTGGATCC

Secondary structure and sequence

TSD    TIR
5'



3' 
TG                 T     TTGAATTCCATTCTAATAATCATAATTTAGACACAAATTAATTAAGCTAATATAGTTGTATGTGGAATATATTTGTATATTATTGTAGGCCATATGGGAGAGATACTTATGTGCTGCACTTCTGCTATAGGGAAGCGAGTCAAAGAGCGTGCTATAAGT
  AGGCCCCGTTTGGATCC TGGAA                                                                                                                                                               
  ||||||||||||||||| |||||                                                                                                                                                               T
  TCCGGGGCAAACCTAGG GAAGT                                                                                                                                                               
AG                 -     AAAACTTCCTTAACCTTAGATCAATTACTTCATCCGATAAATAGAACCTTACACTGTAAGGTGTTGAAAGGTTTCAAATCTATATTCGGATAGAATTTAAGTACCCCCACCCTCTACCTTTAACTAAGATATCTAGGAGTACGATACAAAGATTATACG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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