SE2750199

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3532
  • Setaria italica
  • SE2750199
  • PIF/harbinger
  • To1
  • scaffold_9:57365385-57365731
  • TAA
  • AGTGAGTGTTTGGACTTGGCTAAAGTTTAGCTCAGGTCAGATGTTTGGATGCT

Secondary structure and sequence

TSD    TIR
5'



3'
TA  T A         --    -               A     G TGT         -AATTAG                     A                                    C   A   CA                   A            T   ATTTACTG
  AG G GTGTTTGGA  CTTG GCTAAAGTTTAGCTC GGTCA A   TTGGATGCT       GATTAGGAGTATTAAATATAG CTAATGATAAAAATAATTGCATAAATTAGGGCTAAT CGC AGA  AATCTATTAAGCCTAATTA TCCATGATTAGC CAT        
  || | |||||||||  |||| ||||||||||||||| ||||| |   |||||||||       ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||  ||||||||||||||||||| |||||||||||| |||        T
  TC C CACAAACCT  GAAC CGATTTCAAATCGAG CCAGT T   AGCCTACGA       TTAATCCTCATAATTTGTATC GATTACTATTTTTATTAACGTATTTAGTCCCGATTA GCG TCT  TTAGGTAATTCGGATTAAT AGGTATTAATCG GTA        
AA  - C         AG    T               C     G ---         ACTACGA                     A                                    A   C   AC                   C            T   CACTACGA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End