SE2750209

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3542
  • Setaria italica
  • SE2750209
  • PIF/harbinger
  • To32
  • scaffold_4:9282727-9283095
  • TAA
  • AGGGCCTGTTTGGTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                CACA       GC       --               ATAAGTTGCTTATGAAACCAATCACTCTTGCTTATGAGGTTGCTTATGGGGTTGCTTATTATAAGCAAATAAGCAACTCTTGGGTTGCTTATGGTTGCTTATGGGGACTTCCCGATGCACTTTACACCTCT
  AGGGCCTGTTTGGTTT    TGCTTAT  ATAAGCA  ACTTAAAATAAGCAA                                                                                                                                   
  ||||||||||||||||    |||||||  |||||||  |||||||||||||||                                                                                                                                    
  TCCCGGACAAACCAAA    ACGAATA  TATTCGT  TGAATTTCAACGAAT                                                                                                                                   
AA                CTCA       -A       GT               AAACCTCAACGAATAAAAATCAAGTCGACAAACCTTTGGGAACGAATATTCGTAACTTACTCCACCTATAACAGTACAAACGGGGATTAGTAACTCTCTCTCCCTCCCGTTGGTCCGTAAGTTACTCCCGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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