SE2710212

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3545
  • Setaria italica
  • SE2710212
  • Tc1/Mariner
  • St24
  • scaffold_8:32544408-32544730
  • TA
  • T

Secondary structure and sequence

TSD    TIR
5'



3' 
TAT     TC    GTTCAAATTAGTTAAGTGGGCATTGAAGTAGTTCATCACTGTTATGTACTCCCTCCGTATAGGAAAAGGAAGTCGTTTTGGACAGTGACACGATCTCCAAAGCATTACTTTGACTCCTTATTTTTATAAAAATATTTATCAAAAAGTGAT
   TAATT  TTTG                                                                                                                                                      
   |||||  ||||                                                                                                                                                       
   ATGAG  GGAG                                                                                                                                                      
        --    GCATATCCTTTTCTTTCAGCAAAACCTGTTCCAAACCCAGTTTGTAACCCTTATATTTAGTACTTATTGAAAATTCAACAACTCAAACCTTTACACTTTCGGTATATTTATCTAAACAGAACTTTTTATGAAAGTATTTTTATATGTATA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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