SE2720214

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3547
  • Setaria italica
  • SE2720214
  • Mutator
  • M8
  • scaffold_5:2061954-2062723
  • AAAATCTTA
  • GAATAAAGTACATGGCCGGTCCTTAAACTTATCTAGATGTGTCACTTAGGTCCCCGCACTCTCAAAATGCATATCTGGCTTCCTAAACTTGGGCTCGAGTGTCATTTAGGTCCCTATACTGTCAAAATGTAGATCTTACTTCCAAACTTGGCTTCGGGTGTCATATAGGTCTCTAAACTCTTGAAATGCATTGTCATC

Secondary structure and sequence

TSD    TIR
5'



3'
AAAATCTTA  A      A                    A   AGA          A   C    C                                   G                           G   A           T      -           C         A    T   -  A      G   T           CCAC         ATGATAAGATCAAAATTTTATACTTTCAAGCAAGCCATTACTTTCATTGGCACATTTCCAAACTTGTTTTATTGCCCTGTCAGTTTCTCCCGATATTTGATCAGTAATTCATCTTATAAGCCCTGATTTTAGTTTAGTAAGTAAATGAGTTATTTAAATTTGAACA
         GA TAAAGT CATGGCCGGTCCTTAAACTT TCT   TGTGTCACTT GGT CCCG ACTCTCAAAATGCATATCTGGCTTCCTAAACTTGG CTCGAGTGTCATTTAGGTCCCTATACT TCA AATGTAGATCT ACTTCC AAACTTGGCTT GGGTGTCAT TAGG CTC TA ACTCTT AAA GCATTGTCATC    TAATAGAAC                                                                                                                                                                      
         || |||||| |||||||||||||||||||| |||   |||||||||| ||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||| |||||| ||||||||||| ||||||||| |||| ||| || |||||| ||| |||||||||||    |||||||||                                                                                                                                                                       
         CT ATTTCA GTATCGGCCAGGAGTTTGAA AGA   ATACAGTGAA CCA GGGC TGAGAGTTTTACGTATAGACCGAGGGATTTGAACC GAGCTCATAGTAAATCCAGGGATATGA AGT TTACGTCTAGA TGGGGG TTTGGATCGAA CCTACAGTA ATCT GGG AT TGAGAG TTT CGTAACAGTAG    TTAATTTAA                                                                                                                                                                      
ATTCTAAAA  C      C                    C   GCG          -   A    A                                   G                           G   C           T      A           A         G    -   T  A      A   T           --AA         CTATTTTTGAATTAAAATGTATCTATATTAAATTAACATCAGTTTATTTCACTTAAAATCAAGTTGCACACACCTCTTAAAACTACGCACCACTTGGGTCTCTCTAACTACTAGAAAATGAAACCTCCATTATACAATTGAAGTATGAGGCAATATGGATATTATA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End