SE2750216

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3549
  • Setaria italica
  • SE2750216
  • PIF/harbinger
  • To34
  • scaffold_9:6059515-6059904
  • TAA
  • AGGTCCTGTTTGG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA   T         ---   -            G   AACACCCCACTTTTAACACTTTTTAACACTTTTCTTATCCAAACACTTGTGTTAAAAGTGAGATGTTAAAGTTTAACACCCAATTTTTCATAAACACATGGAGGGGGTGTTAAAACTTGCTAAAGGTGTTAAAAGTGGTCCCCCTCTCTACTTTTTCCC
  AGG CCTGTTTGG   GAA GAGGGTGTTAAA TTT                                                                                                                                                               
  ||| |||||||||   ||| |||||||||||| |||                                                                                                                                                               A
  TCC GGACAAACC   GGG CACAATTTTAAA TTG                                                                                                                                                               
AA   C         TAT   A            -   TTCACAATTTCAAAATTGTGAGAGTTTATCTCACGATTTCAAATTGTGTAACCCCACAAACCTACTACACAATTTGAAATTGTGGAAACCACCCTTTACTGAGGTAACGGGGAGTAAATACCGGCCGCTTCTCTCTCCCTCCTCTCTCTTCCCCATTGG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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