SE2720217

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3550
  • Setaria italica
  • SE2720217
  • Mutator
  • M10
  • scaffold_3:25408498-25409046
  • TTTTGAAAG
  • TTTTGAAAGGAAAAAGTCCAAATCACTCCCTTCAAGTATAGAGAAAGTCCAGATAACCCCCTAAACTATGTTTTGGTTCAATTTACCCCCTAAACTATGCTATTTAGTTCAACTTACCCCATAATGCAATTTGTTCTTTTTGTTTCTCCATACACAAGTTGAATTTTAATTTGAGACTTTTCAGAGTGGTAGTAGACATCATAATCTATATTAAAAAATATTTTATGAATTTTCATCATTATTTT

Secondary structure and sequence

TSD    TIR
5'



3'
    T                   C                 AG      CA              C   G          A         -               A      C       A  A           C               A       T  A      T  G   C   T   A                   TC   A   -        TTT         -C           -------T    TAATTTTGTATCTCAGGGA
 TTT GAAAGGAAAAAGTCCAAAT ACTCCCTTCAAGTATAG  AAAGTC  GATAACCCCCTAAA TAT TTTTGGTTCA TTTACCCCC TAAACTATGCTATTT GTTCAA TTACCCC TA TGCAATTTGTT TTTTTGTTTCTCCAT CACAAGT GA TTTTAA TT AGA TTT CAG GTGGTAGTAGACATCATAA  TAT TTA AAAAATAT   ATGAATTTT  ATCATTATTTT        TATA                   
 ||| ||||||||||||||||||| |||||||||||||||||  ||||||  |||||||||||||| ||| |||||||||| ||||||||| ||||||||||||||| |||||| ||||||| || ||||||||||| ||||||||||||||| ||||||| || |||||| || ||| ||| ||| |||||||||||||||||||  ||| ||| ||||||||   |||||||||  |||||||||||        ||||                    
 AAG TTTTCCTTTTTCAGGTTTA TGAGGGGAGTTCATATT  TTTCAG  CTATTGGGGGATTT GTA AAAACCAGGT AAATGGGGG ATTTGATACGGTAAA CAAGTT AATGGGG AT GTGTTAAACAG AAAAACAAAGAGGTA GTGTTCA CT AGAATT AA TTT AAA GTT TACTATCGTCTGTAGTATT  GTA AAT TTTTTATA   TATTTAAAA  TAGTAATAAAA        TCCT                   
A   T                   A                 GA      AC              C   A          C         G               C      A       A  C           A               C       C  C      C  G   A   C   C                   CT   C   C        TAC         AA           CTATCCCA    ATAAATTATTATTTTAAAT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End