Plant MITE

SE2710218

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3551
Setaria italica
SE2710218
Tc1/Mariner
St4
scaffold_9:50432552-50432765
TA
TACTCCCTCCGTC

Secondary structure and sequence

TSD TIR

5'

3'

             AAAA        A         -  -------AATTT   ------ A   ATTAACAAGAAGGTAAAATGACCTTGTTTGCCCCTATTTATTAGCCATATT
TACTCCCTCCGTC    AAAAAACA GTCATTCTA GA            TAG      G CAA                                                   
|||||||||||||    |||||||| ||||||||| ||            |||      | |||                                                   T
ATGAGGGAGGCAG    TTTTTTGT CAGTAAGAT CT            GGT      T TCA                                                   
             --GG        A         A  AAGTTTTAAACA   TCTTTG -   GCAAAATGAGATATACCATACACGTACACGTACGTCGACAGTTAATCGTGG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2710218

TACTCCCTCCGTCAAAAAAAAAACAAGTCATTCTAGAAATTTTAGGACAAATTAACAAGAAGGTAAAATGACCTTGTTTGCCCCTATTTATTAGCCATATTTGGTGCTAATTGACAGCTGCATGCACATGCACATACCATATAGAGTAAAACGACTTGTTTCTTGGACAAATTTTGAATCATAGAATGACATGTTTTTTGGGACGGAGGGAGTA

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