SE2730220

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3553
  • Setaria italica
  • SE2730220
  • hAT
  • Hat16
  • scaffold_9:5143875-5144048
  • GCCACAGG
  • GGTAGGGGTGGTAATGGAT

Secondary structure and sequence

TSD    TIR
5'



3' 
GCCACA   -           T    CAT   CCTCATGCCTTCTTCACAATCCAACTCAGCACTATCAATTTTTAGTTCAAAATCATA
      GGT AGGGGTGGTAA GGAT   GGC                                                         
      ||| ||||||||||| ||||   |||                                                         T
      CCG TCCCCACCATT CCTG   GGA                                                         
 GGACA   A           T    ---   GATTAAATTGGATCGTTTAAATTCCTAGCCCGAGTTATTCCCGACCTGATATTCTAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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