SE2750226

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3559
  • Setaria italica
  • SE2750226
  • PIF/harbinger
  • To25
  • scaffold_9:49331548-49331858
  • TAA
  • AGGGT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA     ---------GC      ---   AGCTCTCATAGCTGATTCTATACTGATTCCAGCAGGAGCTCTGCCAAACAGTCTTTTAGAGAGAAGTGATTCTCTACTGATTGTGTGAAGTGATTCTCTGAAATAAACTAAGAGCCTGGGAGCTGGAAAAA
  AGGGT           GTTTGG   CAG                                                                                                                                   
  |||||           ||||||   |||                                                                                                                                   A
  TCCCA           TCGAGG   ATT                                                                                                                                   
AA     GACAAACCATC      TAG   AAAACTAAGAAATACCCTCGGCTAAGAGACTCTCTTCACTAAGACACCGATTTTCACTAATAGAAACTAAGAGATCGTATTTGAGAATTTTAGTCCTACCTCTTAGTGAAGTGTTTTAGTCCTCTTCGATA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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