SE2720228

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3561
  • Setaria italica
  • SE2720228
  • Mutator
  • M1
  • scaffold_9:2742018-2742567
  • AAAAAAATA
  • GGAAAAAGTCTATTTTACTCCCCTCACCTATTTACTTTGTCCACTTAACCCCCTAAGCAAAATTTAGGCTCACTTTACTCCCCCAAACTATTTCATTTGGTCCAATCCACCCCCTAATTAGATTTCTCTTTTTTGTTTCTTCGCGTA

Secondary structure and sequence

TSD    TIR
5'



3'
AAAAAAATA                                          A           A      A   A                 CA                      C                                 C C   CAAA         AAT            C   TGACT  T           CC      A    G       -     A       A   C        CA   TTGTATATCTAA  TCA
         GGAAAAAGTCTATTTTACTCCCCTCACCTATTTACTTTGTCC CTTAACCCCCT AGCAAA TTT GGCTCACTTTACTCCCC  AACTATTTCATTTGGTCCAATC ACCCCCTAATTAGATTTCTCTTTTTTGTTTCTT G GTA    TTGAATTTT   TTCAGATTTTGT AGT     TA AACATGATGCT  ATGTTA AAAA TATATTA GAATT TTTCATG TTA TTTTCGTA  GTT            GA   
         |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||| |||||||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||    |||||||||   |||||||||||| |||     || |||||||||||  |||||| |||| ||||||| ||||| ||||||| ||| ||||||||  |||            ||    
         CCTTTTTCAGGTAAAATGAGGGGAGTGGATAGGTGAAACGGG GAATTGGGGGA TTGTTT AAA CCGAGTGAAATGAGGGG  TTGATAAAGTAAACCGGGTTAG TGGGGGATTAATCTAAAGAGAAAAAACAAAGAA C CAT    AACTTAAAA   AAGTTTAAAACA TCG     GT TTGTACTACGG  TACAAT TTTT ATATGAT CTTAA AAAGTAC AAT AAAAGTAT  CAA            CT   
ATAAAAAAA                                          C           C      C   A                 AC                      A                                 A A   ACTC         CTC            C   TATAT  T           AA      C    A       T     -       C   -        -C   TCCTTAATTATG  TTA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End