SE2710232

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3565
  • Setaria italica
  • SE2710232
  • Tc1/Mariner
  • St25
  • scaffold_7:20699696-20699926
  • TA
  • TACTCCCTCCATTCCAAATTATAGCTCAC

Secondary structure and sequence

TSD    TIR
5'



3' 
          A             C    ACCAA                   TG   -AC          A   A        G  ACAA   AAAAATATGCACTAGAAAAGCCA
TACTCCCTCC TTCCAAATTATAG TCAC     CTTTGTCCTAAGTCAAATT  TCT   CTTTGACCAA TTT TAGGAAAA GC    GCA                       
|||||||||| ||||||||||||| ||||     |||||||||||||||||||  |||   |||||||||| ||| |||||||| ||    |||                       A
ATGAGGGAGG AAGGTTTAATATC AGTG     GAAACAGGATTCAGTTTGA  AGA   GAAACTGGTT AAA ATCTTTTT TG    GGT                       
          C             A    AAATC                   TG   ATT          C   A        A  ---G   AGGCAGGGTGTAAAGTCCAGCAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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