SE2750239

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3572
  • Setaria italica
  • SE2750239
  • PIF/harbinger
  • To1
  • scaffold_2:44879587-44879937
  • TTA
  • AGGGGGTGTTTGGA

Secondary structure and sequence

TSD    TIR
5'



3'
TT              AACACCCCCA          TACC  -               -  A           T         -  T       C          ACA    ---TGG GT                                        G   T A   T     GCTA
  AGGGGGTGTTTGGA          TAAATTTTAG    GG CACATCGGATGTTTG AT CTAATTAGGAG ATTAAATAT AG CTAATTA AAAACTAATT   CAGA      A  CTAATTCGCGAGACGAATCTATTAAGCCTAATTAGTCCAT ATT G CAA GTGGT    
  ||||||||||||||          ||||||||||    || ||||||||||||||| || ||||||||||| ||||||||| || ||||||| ||||||||||   ||||      |  |||||||||||||||||||||||||||||||||||||||| ||| | ||| |||||    C
  TCCCCCACAAACCT          ATTTGAAATC    CC GTGTAGCCTACAAGC TA GATTAATCCTC TGATTTATA TC GATTAAT TTTTGATTGA   GTCT      T  GATTAAGCGTTCTGCTTAGATAATTCGGATTAATTAGGTA TAA C GTT TACCA    
AT              -ACGCCCATG          CTCC  A               C  C           C         C  -       A          --C    TGGGGA AT                                        G   T -   -     ATGA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End