SE2710245

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3578
  • Setaria italica
  • SE2710245
  • Tc1/Mariner
  • St3
  • scaffold_3:5584163-5584313
  • TA
  • CCATCCGTCCCAAATTACTATTCGTTTTGGCTTTTCTAGATACATAACTTTTGCTATGTATCTAGACATAGTATATATCTAGGTGCATATCAAAAGCTATGTACCTAGAAAAGCCAAAACGAATAGTAATTTGGGACGGAGG

Secondary structure and sequence

TSD    TIR
5'



3' 
 TACT  A                                    A      A      C            C   G
     CC TCCGTCCCAAATTACTATTCGTTTTGGCTTTTCTAG TACATA CTTTTG TATGTATCTAGA ATA 
     || |||||||||||||||||||||||||||||||||||| |||||| |||||| |||||||||||| ||| T
     GG AGGCAGGGTTTAATGATAAGCAAAACCGAAAAGATC ATGTAT GAAAAC ATACGTGGATCT TAT 
ATATT  -                                    C      C      T            A   A
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3