Plant MITE

SE2710255

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3588
Setaria italica
SE2710255
Tc1/Mariner
St2
scaffold_9:9949265-9949524
TA
TACTCCCTCC

Secondary structure and sequence

TSD TIR

5'

3'

          ATCTA            ATG    GACTTG     -   ------------      ATAACA         TTC    ATCTTA      ATTG     GG      ACTTA     A     GA  - T     AT
TACTCCCTCC     TGTTTATAAGGC   GTAT      GCACA GTC            TTCCAA      CTTTGACCA   ATTT      TATTAT    TTTAT  TTATAA     TAATC TTGTA  GT G ATTTG  
||||||||||     ||||||||||||   ||||      ||||| |||            ||||||      |||||||||   ||||      ||||||    |||||  ||||||     ||||| |||||  || | |||||   
ATGAGGGAGG     ATAAATATTCCG   CGTG      TGTGT TAG            AAGGTT      GAAACTGGT   TAAA      ATAATA    AAATA  AATATT     ATTAG AATAT  CA C TAAAC  
          CAAAA            ---    ------     A   TTCTAAGTTTGA      -----A         TAT    ---CTA      -AAA     -A      ---AC     A     AC  A C     AT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2710255

TACTCCCTCCATCTATGTTTATAAGGCATGGTATGACTTGGCACAGTCTTCCAAATAACACTTTGACCATTCATTTATCTTATATTATATTGTTTATGGTTATAAACTTATAATCATTGTAGAGTGTATTTGATTACAAATCCAACCATATAAAGATTACATTATAAAATAAAAAAATAATAATCAAATTATTGGTCAAAGATTGGAAAGTTTGAATCTTGATATGTGTGTGCGCCTTATAAATAAAAACGGAGGGAGTA

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