SE2710256

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3589
  • Setaria italica
  • SE2710256
  • Tc1/Mariner
  • St3
  • scaffold_8:36907523-36907673
  • TA
  • TACTCCCTCCGTTCCAAATTGTAGGTCGTTTTGGATTTTCTAGGTTCATAAATATTATTATGCATCTAGATATAGTGTATGTCTAGATGCATAATAATATCTATGAATCTAAAAGAGCTAAAACGACCTATAATTTGGAACGGAGGGAGTA

Secondary structure and sequence

TSD    TIR
5'



3' 
                                  A    C          A                       G
TACTCCCTCCGTTCCAAATTGTAGGTCGTTTTGG TTTT TAGGTTCATA ATATTATTATGCATCTAGATATA 
|||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||| T
ATGAGGGAGGCAAGGTTTAATATCCAGCAAAATC AGAA ATCTAAGTAT TATAATAATACGTAGATCTGTAT 
                                  G    A          C                       G
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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