Plant MITE

SE2730257

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3590
Setaria italica
SE2730257
hAT
Hat17
scaffold_6:33876757-33876932
ACGTCTCA
GTCTCACAATGGCGGAGCTAGA

Secondary structure and sequence

TSD TIR

5'

3'

 AC   -    AA   C       G ACACAAATCAATGAG   -    TAATACTAATATGTTGCTTAATGTACTCATTTTTTAGTTTCTAAGCAT
   GTC TCAC  TGG GGAGCTA A               GAG CCAT                                                
   ||| ||||  ||| ||||||| |               ||| ||||                                                C
   CGG AGTG  ATC CCTCGAT T               CTC CCCG                                                
ACT   C    --   T       G --------------A   T    GTGCCGGGGAGGAACGGTTAACGTTTTTGGTAATTGGTCGATGTTTAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2730257

ACGTCTCACAATGGCGGAGCTAGAACACAAATCAATGAGGAGCCATTAATACTAATATGTTGCTTAATGTACTCATTTTTTAGTTTCTAAGCATCAATTTGTAGCTGGTTAATGGTTTTTGCAATTGGCAAGGAGGGGCCGTGGCCCTCTCATGTAGCTCCTCTAGTGACGGCTCA

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