Plant MITE

SE2740258

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3591
Setaria italica
SE2740258
CACTA
Ca1
scaffold_3:36544143-36544790
CAC
CACTAGTAGAGAACTGTGCTTT

Secondary structure and sequence

TSD TIR

5'

3'

CAC             C  T     AA   --        AGGGTGCAAA       AAAATGCATCCGGGATAAACCAACCGGGACAGGGGGGGTCTTTTATCCCGGGTCACTCAACCGGGACAAAAGACCCCCTTTTATCCCGGTTACCAACCGGGATAAAAGGGTCGAGAGCGCCGACGCTGCAAAAAAAAAAAATCCCGAGCTCCCAGGCAGGCCCCCTAACACAAGTCACAAGTCACGCGATTTTTCACGCGAAATATGCGCGTGCGCGGTTCGTGGGATTCGAACCCACAACCTCCAGCCTCGCGCGTAGCTTCCTTGCCATCCC
   CACTAGTAGAGAA TG GCTTT  TCC  CGGTTGGT          TATCCCG                                                                                                                                                                                                                                                                                  
   ||||||||||||| || |||||  |||  ||||||||          |||||||                                                                                                                                                                                                                                                                                   
   GTGATCATCTCTT AC CGAAA  GTA  CGGGGGAA          AACAGGG                                                                                                                                                                                                                                                                                  
CAC             A  -     -G   TG        ----------       CCAAATTTCAACCGGACCCTGTTTTCCAAGTGGTTGGCCCTGATTTTGAGCCAGTGACCACCCCCCGAGTGGTTGGCCTTGGAAAATAGGGCCAACGTTTCCGATTACTCTTTTTTTCTGAGACTCTCCGGAAAATAGGGCCAAACTTTGTGGTTGGCCCTATTTTCTGGGGGGGAAAATAGGGCCAACCCTTGTGGTTGGCTCTATTTTCCCAGTTCTCGGAAAATTATGTTTTCCTATCATAGGGGATATATCAGTCTACACCACACATCCA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2740258

CACCACTAGTAGAGAACTGTGCTTTAATCCCGGTTGGTAGGGTGCAAATATCCCGAAAATGCATCCGGGATAAACCAACCGGGACAGGGGGGGTCTTTTATCCCGGGTCACTCAACCGGGACAAAAGACCCCCTTTTATCCCGGTTACCAACCGGGATAAAAGGGTCGAGAGCGCCGACGCTGCAAAAAAAAAAAATCCCGAGCTCCCAGGCAGGCCCCCTAACACAAGTCACAAGTCACGCGATTTTTCACGCGAAATATGCGCGTGCGCGGTTCGTGGGATTCGAACCCACAACCTCCAGCCTCGCGCGTAGCTTCCTTGCCATCCCACCTACACACCACATCTGACTATATAGGGGATACTATCCTTTTGTATTAAAAGGCTCTTGACCCTTTTATCTCGGTTGGTGTTCCCAACCGGGATAAAAGGGGGGGTCTTTTATCCCGGTTGGTGTTTCAAACCGGGATAAAAGGCCTCTCAGAGTCTTTTTTTCTCATTAGCCTTTGCAACCGGGATAAAAGGTTCCGGTTGGTGAGCCCCCCACCAGTGACCGAGTTTTAGTCCCGGTTGGTGAACCTTTTGTCCCAGGCCAACTTTAAACCGGGACAAAAGGGGGCGTATGGAAAGCCAATTCTCTACTAGTGCAC

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