Plant MITE

SE2730266

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3599
Setaria italica
SE2730266
hAT
Hat12
scaffold_2:35655970-35656141
CTGGATGG
GGCAGTGGCGGAGCTTG

Secondary structure and sequence

TSD TIR

5'

3'

CTGGAT     T           AACAATTAATC         --     G  AATTT   -C  A     AATGAA   TAGCTGATTCAC
      GGCAG GGCGGAGCTTG           AGGGGGCCA  GCTAT CT     GCT  TG AAATC      CAG            
      ||||| |||||||||||           |||||||||  ||||| ||     |||  || |||||      |||             
      TCGTC CCGCCTCGAAT           TCCCCCGGT  CGGTG GG     CGA  AC TTTAG      AGG            
GGTAGG     C           CACATCACATT         AC     G  ---AC   TA  C     ------   TGATATACTTAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2730266

CTGGATGGCAGTGGCGGAGCTTGAACAATTAATCAGGGGGCCAGCTATGCTAATTTGCTCTGAAAATCAATGAACAGTAGCTGATTCACTATTCATATAGTGGAGATTTCCAATAGCCAGGGGTGGCCATGGCCCCCTTTACACTACACTAAGCTCCGCCCCTGCTGGATGG

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