Plant MITE

SE2710267

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3600
Setaria italica
SE2710267
Tc1/Mariner
St27
scaffold_9:34849976-34850207
TA
TACTTCCTTCATCCCGTGAAAAGTGTGATCCTA

Secondary structure and sequence

TSD TIR

5'

3'

          A         AA       C   ----C    TGAAAAAATCCCGCAAAAAAGTACAATCCTAGAAAATAAATCTACCTACCTACCTAAATTAAGTGGTCAAATCTGA
TACTTCCTTC TCCCGTGAA  GTGTGAT CTA     CTTT                                                                            
|||||||||| |||||||||  ||||||| |||     ||||                                                                             
ATGAGGGAGG AGGGTACTT  CACATTA GAT     AGAT                                                                            
          C         CC       A   CAAAA    CCTATCTAATCACCACCGTATTCTTCTGAGATTATGGGAGTAAAAACCGGTGTACGTTATTCAAAATCGTACGTTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2710267

TACTTCCTTCATCCCGTGAAAAGTGTGATCCTACCTTTTGAAAAAATCCCGCAAAAAAGTACAATCCTAGAAAATAAATCTACCTACCTACCTAAATTAAGTGGTCAAATCTGATTTGCATGCTAAAACTTATTGCATGTGGCCAAAAATGAGGGTATTAGAGTCTTCTTATGCCACCACTAATCTATCCTAGAAAAACTAGAATTACACCCTTCATGGGACGGAGGGAGTA

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