Plant MITE

SE2730269

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3602
Setaria italica
SE2730269
hAT
Hat16
scaffold_2:43525788-43525959
AGTACAGT
GTACAGTTAGGGGTGGTAAAGGCTC

Secondary structure and sequence

TSD TIR

5'

3'

  A    AG             A  C  --   AATTTAGCCTAGCAAATTTAAGGATCGGGCTTAATAAGAGTCGGACTATAAATTTA
   GTAC  TTAGGGGTGGTAA GG TC  TCT                                                        
   ||||  ||||||||||||| || ||  |||                                                         
   CATG  AATCCCCACCATT CC AG  TCG                                                        
TGA    --             A  T  CA   GTAGTACGGAGGAGTGTTAGGTTGAATCGGGATAGATAAAAATCAAGTTTTAGTAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2730269

AGTACAGTTAGGGGTGGTAAAGGCTCTCTAATTTAGCCTAGCAAATTTAAGGATCGGGCTTAATAAGAGTCGGACTATAAATTTATATGATTTTGAACTAAAAATAGATAGGGCTAAGTTGGATTGTGAGGAGGCATGATGGCTACGATCCATTACCACCCCTAAGTACAGT

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