SE2750272

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3605
  • Setaria italica
  • SE2750272
  • PIF/harbinger
  • To1
  • scaffold_3:11241912-11242263
  • TAT
  • GGGGGTGTTTGAGAACACCGTGCTAAACTTTAGCACCTGTCACATCGGATGTTTGGATACTAATTAGGAGTATTAAACATAGTCTAATTACAAAACTAATTGCACAGATGGAGTCTAATTCGCGAGACGAATCTATTAAGCCTAATTAGTCCATGATTTGACAATGTGGT

Secondary structure and sequence

TSD    TIR
5'



3'
TAT           A  -  ACC                CCT                    A           T         -  T                                                         C             G   T A   T     GCTA
   GGGGGTGTTTG GA AC   GTGCTAAACTTTAGCA   GTCACATCGGATGTTTGGAT CTAATTAGGAG ATTAAACAT AG CTAATTACAAAACTAATTGCACAGATGGAGTCTAATTCGCGAGACGAATCTATTAAG CTAATTAGTCCAT ATT G CAA GTGGT    
   ||||||||||| || ||   ||||||||||||||||   |||||||||||||||||||| ||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| | ||| |||||    C
   CCCCCACAAAC CT TG   TACGATTTGAAATCGT   CAGTGTAGCCTATAAGCCTA GATTAATCTTC TGATTTGTA TC GATTAATGTTTTGATTAACGTGTCTACCTCAGATTAAGTGCTCTGCTTAGATAATTC GATTAATTAGGTA TAA C GTT TACCA    
TAT           -  A  CTC                -CC                    C           C         C  -                                                         C             G   T -   -     ATTA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End