SE2750279

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3612
  • Setaria italica
  • SE2750279
  • PIF/harbinger
  • To41
  • scaffold_6:32836856-32837219
  • TAA
  • GGCCCCCTTTGGAACAAAGGA

Secondary structure and sequence

TSD    TIR
5'



3' 
 TAA    CC        CA     AA    TAGGAGTTTTGAAGGATTCTAATCCTGTAGGAAAATTACCTATGTACCCCTTTGGAATAAAGGGTTGCACCTTATGAAATTCCTTAGGATTCCTATGCGATGCATGAATCAATAGAAATTTTGGAGGAAAACTAACATGACGTTGGATCTCAT
    GGCC  CTTTGGAA  AAGGA  ACCA                                                                                                                                                         
    ||||  ||||||||  |||||  ||||                                                                                                                                                          
    CCGG  GAAACCTT  TTTCT  AGGA                                                                                                                                                         
AATC    -A        AC     --    GCTTGCACCTTTGTCCTTTCTCATGTCCTAACCGCAACGTACCTTGAACGTTAGGATATCCTTAAGTTTTACGTCCTTGTAAGGTTAGATCGTAAATCTACGTGGTGTCCCTTTTACGTGCTTAAGTTTCTCTCTATCTGTGTTCCTTTCAGG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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