Plant MITE

SE2750293

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3626
Setaria italica
SE2750293
PIF/harbinger
To42
scaffold_3:3866110-3866452
TGA
AGGCCCTGTTTGGATCCACCAGCTAA

Secondary structure and sequence

TSD TIR

5'

3'

TG                    -                 CTA    -     - CTAT  A CCAAATAGGACCCGGCTAAATTTTAGCTGGCTAAAGATTCCCTTAGCTAGTTGAACCCAGCTAAAGTGATAAAAGACCAAACTGCCCCTCCACCTTCCTCGGGAAAAGTATTT
  AGGCCCTGTTTGGATCCACC AGCTAAACTTTAGCTGG   AATT TAGCT G    GG T                                                                                                                 
  |||||||||||||||||||| |||||||||||||||||   |||| ||||| |    || |                                                                                                                 A
  TCCGGGACAAACCTAGGTGG TTGATTTCAAATCGATC   ATTT AAATC T    CG A                                                                                                                 
AG                    G                 --G    C     C ----  - AAGAAAATCGATCGATTTCAAATAGATCGATTTGAAATCGATCCCCACAAACCTAGGAGATCGATTTACCATCATCTTTTCCATAAACAGATAGGATAGGGAGTGAGGGTGAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2750293

TGAGGCCCTGTTTGGATCCACCAGCTAAACTTTAGCTGGCTAAATTTAGCTGCTATGGATCCAAATAGGACCCGGCTAAATTTTAGCTGGCTAAAGATTCCCTTAGCTAGTTGAACCCAGCTAAAGTGATAAAAGACCAAACTGCCCCTCCACCTTCCTCGGGAAAAGTATTTAAAGTGGGAGTGAGGGATAGGATAGACAAATACCTTTTCTACTACCATTTAGCTAGAGGATCCAAACACCCCTAGCTAAAGTTTAGCTAGATAAACTTTAGCTAGCTAAAAGAAAGCTCCTAAACTTTAGCTAGCTAAACTTTAGTTGGGTGGATCCAAACAGGGCCTGA

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