SE2710296

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3629
  • Setaria italica
  • SE2710296
  • Tc1/Mariner
  • St10
  • scaffold_4:39188059-39188319
  • TA
  • TACTCCCTTCGTCCCAGAATATAGCTACGTTTAGACTTTTTCAAAGTCAAATCTTCTCAACTTTGACTGCGAATAGAGAAATAATCATAGAGA

Secondary structure and sequence

TSD    TIR
5'



3' 
                                  A          -          CTC           -   -  --AG         --------C       CTAATG     AAA    TGT      A   ATC
TACTCCCTTCGTCCCAGAATATAGCTACGTTTAG CTTTTTCAAA GTCAAATCTT   AACTTTGACTG CGA AT    AGAAATAAT         ATAGAGA      ACATA   ATAA   TAGTTG TTT   
|||||||||||||||||||||||||||||||||| |||||||||| ||||||||||   ||||||||||| ||| ||    |||||||||         |||||||      |||||   ||||   |||||| |||    
ATGAGGGAGGCAGGGTTTTATATCGATGCAAATC GAAAAAGTTT CAGTTTAGAA   TTGAAACTGGT GTT TA    TTTTTATTA         TATCTTT      TGTAT   TATT   ATCAAC AAA   
                                  -          T          AAA           T   A  GAGA         AATAAAGTT       -TCCAA     -AA    ---      C   GTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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