Plant MITE

SE2710299

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3632
Setaria italica
SE2710299
Tc1/Mariner
St3
scaffold_1:30021679-30021830
TA
TACTCCCTCCGTCCCAAATTATAGGTCGTTTT

Secondary structure and sequence

TSD TIR

5'

3'

            C                   TCCT   CT A      T C                      TA
TACTCCCTCCGT CCAAATTATAGGTCGTTTT    TTT  A ATTCAT G TTTTGCTATGCATCTAGATATA  
|||||||||||| |||||||||||||||||||    |||  | |||||| | ||||||||||||||||||||||   
ATGAGGGAGGCA GGTTTAATATCCAGCAAAA    AAA  T TAAGTA C AAAACGATACGTGGATCTGTAT  
            A                   CCAT   AT C      T T                      TA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2710299

TACTCCCTCCGTCCCAAATTATAGGTCGTTTTTCCTTTTCTAAATTCATTGCTTTTGCTATGCATCTAGATATATAATTATGTCTAGGTGCATAGCAAAATCTATGAATCTTAAAATACCAAAACGACCTATAATTTGGAACGGAGGGAGTA

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