Plant MITE

SE2750300

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3633
Setaria italica
SE2750300
PIF/harbinger
To44
scaffold_1:8353712-8353960
TAA
AGAGCAAGTATAATAAGG

Secondary structure and sequence

TSD TIR

5'

3'

TA         A      G --     -  ---     -   GAATGCTGACGTGGAGGAGAGAGAAGAGGTGAGAGAGGAGAAGCGGGCTATAAGCTTACAGCCGACTTGGGCACAGGAACCAAGAA
  AGAGCAAGT TAATAA G  GGCTG TA   AGCTG GCT                                                                                      
  ||||||||| |||||| |  ||||| ||   ||||| |||                                                                                       
  TCTCGTTCA ATTATT C  CGATC TT   CCGAC TTC                                                                                      
AA         A      G GT     G  CGC     G   CAAAGAGAGTCGGAAAAGGATCGGGTGAGCATGTTACCAATCGAGAAGTGGTAATTATGTACCAGGTGTTCAGTAAGAGTGTTTCA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2750300

TAAGAGCAAGTATAATAAGGGGCTGTAAGCTGGCTGAATGCTGACGTGGAGGAGAGAGAAGAGGTGAGAGAGGAGAAGCGGGCTATAAGCTTACAGCCGACTTGGGCACAGGAACCAAGAAACTTTGTGAGAATGACTTGTGGACCATGTATTAATGGTGAAGAGCTAACCATTGTACGAGTGGGCTAGGAAAAGGCTGAGAGAAACCTTGCAGCCCGCTTGCTAGCTGCGTTATTAAACTTGCTCTAA

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