SE2730302

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3635
  • Setaria italica
  • SE2730302
  • hAT
  • Hat11
  • scaffold_1:10447298-10447482
  • CACTGAGT
  • ACTGAGTCAGGGGCGGATCTAGGGCCCGGGCTGCAGCCTGGGGC

Secondary structure and sequence

TSD    TIR
5'



3' 
C   G   -                  CC        GC  G    GACCCCA  T -   CCTTTAACATATGTGGTGTTTAGATAAAAACTATGAT
 ACT AGT CAGGGGCGGATCTAGGGC  GGGCTGCA  CT GGGC       TG A GCC                                     
 ||| ||| ||||||||||||||||||  ||||||||  || ||||       || | |||                                     C
 TGA TCA GTCCCCGCCTAGGTCTTG  CCTGACGT  GA CCCG       CT C ACG                                     
    G   C                  -C        -A  G    ------A  - G   ACTAAGTGTGGAGGACTCGGAGGAAAAGAGATTAACT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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