Plant MITE

SE2730305

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3638
Setaria italica
SE2730305
hAT
Hat6
scaffold_3:13856199-13856504
GTAGGTAC
GTAGGTACTAGGCCTGCCACTGG

Secondary structure and sequence

TSD TIR

5'

3'

   GG              C         ATC   A      ---- AA   -A A CCATTTCAAATGGGGATGGTATGGGTAGAAAATTATATACCCATTAGAAATAGGAATTAGAAATAGGGAGGAGAGGGCATGGGGAGGGTACAATTTATTCAT
GTA  TACTAGGCCTGCCA TGGGTATCC   ACC CTCCCC    A  TCC  C C                                                                                                      
|||  |||||||||||||| |||||||||   ||| ||||||    |  |||  | |                                                                                                       
CAT  ATGATCCGGACGGT ACCCCTCCC   ATA CCTGTT    T  GAG  C A                                                                                                      
   GG              A         ---   -      TGGG --   AA - AGTGTGGGTTTAGATATATTAATAATAGGTGAGGAATGGGAGGGATTAGTGTAGGTATAGGTTACCTATTAATTGAAACACGATGTATGTGTGTGCATAGGC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2730305

GTAGGTACTAGGCCTGCCACTGGGTATCCATCACCACTCCCCAAATCCACACCCATTTCAAATGGGGATGGTATGGGTAGAAAATTATATACCCATTAGAAATAGGAATTAGAAATAGGGAGGAGAGGGCATGGGGAGGGTACAATTTATTCATCGGATACGTGTGTGTATGTAGCACAAAGTTAATTATCCATTGGATATGGATGTGATTAGGGAGGGTAAGGAGTGGATAATAATTATATAGATTTGGGTGTGAACAAGAGTGGGTTTGTCCATACCCTCCCCAATGGCAGGCCTAGTAGGTAC

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