SE2720306

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3639
  • Setaria italica
  • SE2720306
  • Mutator
  • M4
  • scaffold_4:18046445-18046806
  • AATATATAG
  • ATATATAGAGCTCTTTTACGGTACATAATACT

Secondary structure and sequence

TSD    TIR
5'



3' 
A      A                         ---     TTAGTAGTATGCAGTATATATAAGATCTAATTGTTCATTATTATGGATAATTTAGTAATTATTATATTATAAAAAGTGATATTTCAAATGTAATGGTCTTTTAAACTTTATGTTAGTGTTAAAAATAAAATTATAGTGATG
 ATATAT GAGCTCTTTTACGGTACATAATACT   ACTAC                                                                                                                                             
 |||||| |||||||||||||||||||||||||   |||||                                                                                                                                             C
 TATATA CTTGAGAAAATGCCATGTGTTATGA   GATAT                                                                                                                                             
A      A                         TCC     GATCGCAAGCTTTTCCTGATCATATTTGTGTAGGCTGCCAGTTCTAATTAACATATGTTGACTTTGTAAGTGGACACCATACCTATCATATGTATTCATCATATCCATCATATTCCCATAGTACCATTTTCTTGTGTTTAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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