Plant MITE

SE2740308

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3641
Setaria italica
SE2740308
CACTA
Ca1
scaffold_1:33127671-33128186
TAT
CACTAGTAGAGATTTGGC

Secondary structure and sequence

TSD TIR

5'

3'

TAT            T     ----------    A       T   TA   TGCAAATATCCCGAAAATCCATCCGGGACAAAAGACCCCCCTTTTATTCCGGTTGGTACGGGCCCTGCTCGCAAGTCACAAGTCACGCGAAATATGCGCGTGCGCGGTTCGTGGGATTCGAACCCACAACCTCCAGCCTCGCGCGTAGCTTCCTTGCCATCCCACCTACACACCACATCTGACTATGTAGGTCTTCCGGTCACCTTCCAATCA
   CACTAGTAGAGA TTGGC          CTTT GTCCCGG TGG  GGG                                                                                                                                                                                                                     
   |||||||||||| |||||          |||| ||||||| |||  |||                                                                                                                                                                                                                      
   GTGATCATCTCT AACCG          GGGG GAAAATA GGG  CTA                                                                                                                                                                                                                     
TAT            T     AAAGGTACGC    -       -   --   AATTTCAACCAGGTCCTGTTTTCCAAGTGGTTGGCCCTGATTTTGAGCCAGTGACCACCCCCTGAGTGGTTGGCCCTGGAAAATAGGGCCAACGTTTCCGATCACCCTTTTTTTCTGAGACTCTCCGGAAAATAGGGCCAAACTTTGTGGTTGGCCCTATTTTCTGGGAGGGCCAACCAGAAAGTTTGGCCCTATTTTCCCAGGGGTTGCTCC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2740308

TATCACTAGTAGAGATTTGGCCTTTAGTCCCGGTTGGTAGGGTGCAAATATCCCGAAAATCCATCCGGGACAAAAGACCCCCCTTTTATTCCGGTTGGTACGGGCCCTGCTCGCAAGTCACAAGTCACGCGAAATATGCGCGTGCGCGGTTCGTGGGATTCGAACCCACAACCTCCAGCCTCGCGCGTAGCTTCCTTGCCATCCCACCTACACACCACATCTGACTATGTAGGTCTTCCGGTCACCTTCCAATCACCTCGTTGGGGACCCTTTTATCCCGGTTTGAAAGACCAACCGGGAGGGTCTTTTATCCCGGTTGGTGTTTCAAACCGGGATAAAAGGCCTCTCAGAGTCTTTTTTTCCCACTAGCCTTTGCAACCGGGATAAAAGGTCCCGGTTGGTGAGTCCCCCACCAGTGACCGAGTTTTAGTCCCGGTTGGTGAACCTTTTGTCCTGGACCAACTTTAAATCGGGATAAAAGGGGGCGCATGGAAAGCCAATTCTCTACTAGTGTAT

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