Plant MITE

SE2750309

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3642
Setaria italica
SE2750309
PIF/harbinger
To1
scaffold_9:22192052-22192406
TAA
AGGGGGTGTTTGGATAGCATGTGCTAAATTTTAGCACCTGTCACATCGGATGTTTGGACACTAATTAGGAGTATTAAACATAGTCTAATTACAAAACTAATTGCACAACCCCTAGGCTAAATCGCGAGACGAATCTATTAAGCCTAATTAATCCATCATTAGCGAATGGT

Secondary structure and sequence

TSD TIR

5'

3'

TA             ATA                     C                    C                                                                                           A     C   -A    -A    TACT
  AGGGGGTGTTTGG   GCATGTGCTAAATTTTAGCAC TGTCACATCGGATGTTTGGA ACTAATTAGGAGTATTAAACATAGTCTAATTACAAAACTAATTGCACAACCCCTAGGCTAAATCGCGAGACGAATCTATTAAGCCTAATTA TCCAT ATT  GCGA  TGGT    
  |||||||||||||   ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||  ||||  ||||    G
  TCCCCCACAAACC   CGTACACGATTTAAAATCGTG ACAGTGTAGCCTACAAATCT TGATTAATCCTCATAATTTGTATCGGATTAATGTTTTGATTAACGTGTTGGGGATCCGATTTAGCGCTCTGCTTAGATAATTCGGATTAAT AGGTA TAA  TGTT  ACCA    
AA             CTC                     T                    A                                                                                           C     C   AC    AC    CGAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2750309

TAAGGGGGTGTTTGGATAGCATGTGCTAAATTTTAGCACCTGTCACATCGGATGTTTGGACACTAATTAGGAGTATTAAACATAGTCTAATTACAAAACTAATTGCACAACCCCTAGGCTAAATCGCGAGACGAATCTATTAAGCCTAATTAATCCATCATTAGCGAATGGTTACTGTAGCACCACATTGTCAAATCATGGACTAATTAGGCTTAATAGATTCGTCTCGCGATTTAGCCTAGGGGTTGTGCAATTAGTTTTGTAATTAGGCTATGTTTAATACTCCTAATTAGTATCTAAACATCCGATGTGACATGTGCTAAAATTTAGCACATGCCTCCCAAACACCCCCTAA

Copy Cancel