SE2710311

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3644
  • Setaria italica
  • SE2710311
  • Tc1/Mariner
  • St3
  • scaffold_1:25289391-25289541
  • TA
  • TACTCCCTCCGTCCCAAATTATAGGTCGTTTTGACTTTATTAGATTCGTAGACTTTGTTATGCACTTAGATATACCCTATGTCTAGATGCATAATAATATCTATGTATCTAGAAAAGTCAAAACGACCTATAATTTGGAACGGAGGGAGTA

Secondary structure and sequence

TSD    TIR
5'



3' 
            C                         A      T      CT          C         C
TACTCCCTCCGT CCAAATTATAGGTCGTTTTGACTTT TTAGAT CGTAGA  TTGTTATGCA TTAGATATA 
|||||||||||| ||||||||||||||||||||||||| |||||| ||||||  |||||||||| ||||||||| C
ATGAGGGAGGCA GGTTTAATATCCAGCAAAACTGAAA GATCTA GTATCT  AATAATACGT GATCTGTAT 
            A                         A      T      AT          A         C
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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