SE2750313

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3646
  • Setaria italica
  • SE2750313
  • PIF/harbinger
  • To46
  • scaffold_1:19137430-19137851
  • TAA
  • AGGGCAGTCCCAATG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA               --   CATTGATGATAGTTTCTATGTCTATTAATTACCTTGACAACTCAGCTTTTTGCTTATGTGGCAATGAAGTTAATGTAGAGGGAGAACGCACAACTAAGAAATGGTTTCCTTCTCAGGAAACTAAGTCTTCACGGGAATCAACGCACCAAGAAACCAGAGAAATGGCATTGGGGAGAAACCACTGGTTTTC
  AGGGCAGTCCCAATG  GGA                                                                                                                                                                                              
  |||||||||||||||  |||                                                                                                                                                                                               
  TCCCGTCAGGGTTAC  GCT                                                                                                                                                                                              
AA               AC   TTGGTAGCATCAAAAGTATCATATCCTATAACATAGTTCTTTAGTAGGAAGTGTTACGTTGAAAAATAGATCTTAGATTTGTTTTTAAGTTGGTTAGTAAGACAGAAGATCATGGTCTAAGAGATACGTGCATTTCCTCCGGGCCACGGACCACCTGAGGGACACGCGTGACCTAGGTCTCCTCCGGCGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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