SE2710314

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3647
  • Setaria italica
  • SE2710314
  • Tc1/Mariner
  • St5
  • scaffold_7:16805179-16805328
  • TA
  • TACTCCCTCCGTCCCAAATTATTATTCGTTTTGGCTTTTCTAGATACATCACTTTTGCTATGTATCTACATA

Secondary structure and sequence

TSD    TIR
5'



3' 
                                 G              TC  -     C        TAC   AGT
TACTCCCTCCGTCCCAAATTATTATTCGTTTTG CTTTTCTAGATACA  AC TTTTG TATGTATC   ATA   
||||||||||||||||||||||||||||||||| ||||||||||||||  || ||||| ||||||||   |||    
ATGAGGGAGGCAGGGTTTAATGATAAGCAAAAC GAAAAGATCTATGT  TG AAAAC ATACGTGG   TAT   
                                 G              -T  T     T        TTC   ATA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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