SE2710317

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3650
  • Setaria italica
  • SE2710317
  • Tc1/Mariner
  • St2
  • scaffold_2:46033578-46033839
  • TA
  • TACTCCCTCCGTTTATCTTTATAAGGCGTACGTGCATATCAAGAT

Secondary structure and sequence

TSD    TIR
5'



3'
         C      C            -AC   C    CAA   TCAAA    A   ------TC        A   T   ACCAATAAT    T    -      -A          AAT G       TT   ATCA
TACTCCCTC GTTTAT TTTATAAGGCGT   GTG ATAT   GAT     GTCT CTA        TTTGACCA TAA TTA         TTTT TATT TTTATG  TGTAAACTTG   T GTTGGAT  GTA    
||||||||| |||||| ||||||||||||   ||| ||||   |||     |||| |||        |||||||| ||| |||         |||| |||| ||||||  ||||||||||   | |||||||  |||     
ATGAGGGAG CAAATA AAATATTCCGCA   TAC TATA   CTG     CAGA GGT        AAACTGGT ATT AAT         AGAA ATAA AAATAC  ATATTTGAAT   A TAACCTA  CAT    
         A      A            CCA   -    ---   --TAC    G   TTAATGTA        A   T   ----AGAAT    T    C      CA          ATT G       -T   GTAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End