Plant MITE

SE2710318

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3651
Setaria italica
SE2710318
Tc1/Mariner
St30
scaffold_9:26782352-26782658
TA
TACTCCCTCCATTCTCTTTTGATAGTACTATTTCC

Secondary structure and sequence

TSD TIR

5'

3'

          A   T          TAC       ----        CAATGACCAAGGAAAACAATCCTACCTATCATGCTACTTATCAACCATTTAATCATGCCATTAACTAGTCCTCGTAAACAAGCGATTCATTAAGGCCTAGATTTCTTG
TACTCCCTCC TTC CTTTTGATAG   TATTTCC    TCTTGGCA                                                                                                            
|||||||||| ||| ||||||||||   |||||||    ||||||||                                                                                                            A
ATGAGGGAGG AAG GAAAACTATC   ATAAAGG    GACTTTTT                                                                                                            
          C   C          CGT       TTTA        AAGAGAAAACTATCAGAATAAAGTCAGGTTGATACGTAGGTGAATTACCAACAGAACCCAGGCTACACACTGAGAATTAAGAAGGTTGGCTCTAACCGATGTACCCGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2710318

TACTCCCTCCATTCTCTTTTGATAGTACTATTTCCTCTTGGCACAATGACCAAGGAAAACAATCCTACCTATCATGCTACTTATCAACCATTTAATCATGCCATTAACTAGTCCTCGTAAACAAGCGATTCATTAAGGCCTAGATTTCTTGATGCCCATGTAGCCAATCTCGGTTGGAAGAATTAAGAGTCACACATCGGACCCAAGACAACCATTAAGTGGATGCATAGTTGGACTGAAATAAGACTATCAAAAGAGAATTTTTCAGATTTGGAAATATGCCTATCAAAAGCGAACGGAGGGAGTA

Copy Cancel