Plant MITE

SE2710320

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3653
Setaria italica
SE2710320
Tc1/Mariner
St3
scaffold_8:20114907-20115057
TA
TACTCCCTCCGTCCCAAATTACTATTCGTTTTGACTTTTCTAGATACATAACTTTTGCTACGTATCTAGACATACCATATATCTAGGTGCATAGCAAAAGCTATGAATCTAAAAAAGCCAAAACGAATAGTAATATGGGACGGAGGGAGTA

Secondary structure and sequence

TSD TIR

5'

3'

                A                A     C     A    A         C         C   C
TACTCCCTCCGTCCCA ATTACTATTCGTTTTG CTTTT TAGAT CATA CTTTTGCTA GTATCTAGA ATA 
|||||||||||||||| |||||||||||||||| ||||| ||||| |||| ||||||||| ||||||||| ||| C
ATGAGGGAGGCAGGGT TAATGATAAGCAAAAC GAAAA ATCTA GTAT GAAAACGAT CGTGGATCT TAT 
                A                C     A     A    C         A         A   A

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

SE2710320

Basic info.

Secondary structure and sequence

MITE cluster

Closed gene

>SE2710320