Plant MITE

SE2710321

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3654
Setaria italica
SE2710321
Tc1/Mariner
St3
scaffold_2:43322387-43322535
TA
TACTCCCTCCGTCCCAAATTATAAGTCGTTTTGGCTTTTTTAGATTCATAGGTTTTGCTATGCACCTAGATATATATTATGTCTAGATGCATAGTAAAAGGTATGAATCTAGAAAACCCAAAACGACATAATTTGGCACGGAGGGAGTA

Secondary structure and sequence

TSD TIR

5'

3'

            C         AA          C               GG            C         T
TACTCCCTCCGT CCAAATTAT  GTCGTTTTGG TTTTTTAGATTCATA  TTTTGCTATGCA CTAGATATA 
|||||||||||| |||||||||  |||||||||| |||||||||||||||  |||||||||||| ||||||||| A
ATGAGGGAGGCA GGTTTAATA  CAGCAAAACC AAAAGATCTAAGTAT  AAAATGATACGT GATCTGTAT 
            C         --          C               GG            A         T

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

SE2710321

Basic info.

Secondary structure and sequence

MITE cluster

Closed gene

>SE2710321