SE2750324

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3657
  • Setaria italica
  • SE2750324
  • PIF/harbinger
  • To1
  • scaffold_9:56950386-56950736
  • TTA
  • AGGGGGTGTTTGGATACGAGATGCTAAACTTTAGTAGGGTCACATCGGATATTCGGATGCTAATTAGAAGAACTAAACATGAGCTAATTACAAAACTAATTGCACGGATGGAGTCTAATTCGCGAGACGAATCTATTAAGGTTAATTAATCCATCATTAGCAAATGGT

Secondary structure and sequence

TSD    TIR
5'



3'
TT             AT   AGA               G -            A  CG            A  AAC    C   AG                           G     A                       G       A     C   -A    -A    TACT
  AGGGGGTGTTTGG  ACG   TGCTAAACTTTAGTA G GTCACATCGGAT TT  GATGCTAATTAG AG   TAAA ATG  CTAATTACAAAACTAATTGCACGGATG AGTCT ATTCGCGAGACGAATCTATTAAG TTAATTA TCCAT ATT  GCAA  TGGT    
  |||||||||||||  |||   ||||||||||||||| | |||||||||||| ||  |||||||||||| ||   |||| |||  ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||| ||||| |||  ||||  ||||    G
  TCCCCCACAAACC  TGT   ACGATTTGAAATCGT T CAGTGTAGCCTA AA  CTATGATTAATC TC   ATTT TAT  GATTAATGTTTTGATTAACGTGTCTAC TCAGA TAAGCGCTCTGCTTAGATAATTC GATTAAT AGGTA TAA  TGTT  ACCA    
AT             CT   GGC               G A            C  -A            C  ATA    A   CA                           A     A                       G       C     C   AC    AC    CGAT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End