Plant MITE

SE2730332

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3665
Setaria italica
SE2730332
hAT
Hat21
scaffold_4:17825153-17825395
CATGCACT
TGCACTTAGGGATGAAAACAATC

Secondary structure and sequence

TSD TIR

5'

3'

CA    CT    G        A   ----------------  GTGGTTATACATTATGATTCCGTTTTCTACATTATGATTTCGTTTTCGACCGTTCCATTTTTAGCAAAATATAAAAGTTGTCAGAT
  TGCA  TAGG ATGAAAAC ATC                GG                                                                                      
  ||||  |||| |||||||| |||                ||                                                                                      T
  ACGT  ATCC TACTTTTG TAG                CA                                                                                      
TC    AC    G        C   TTTTTATTTAATATTA  TCTTTTGCGCCCTGCCAGTCCTAAAAAGGTGTAAATACTTTTATTTGATGATGTTTTTACTACTTCTTACTATAATTTTAATCAAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2730332

CATGCACTTAGGGATGAAAACAATCGGGTGGTTATACATTATGATTCCGTTTTCTACATTATGATTTCGTTTTCGACCGTTCCATTTTTAGCAAAATATAAAAGTTGTCAGATTCAACTAATTTTAATATCATTCTTCATCATTTTTGTAGTAGTTTATTTTCATAAATGTGGAAAAATCCTGACCGTCCCGCGTTTTCTACATTATAATTTATTTTTGATCGTTTTCATGCCTACATGCACT

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