SE2750336

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3669
  • Setaria italica
  • SE2750336
  • PIF/harbinger
  • To1
  • scaffold_3:8991169-8991535
  • TAA
  • AGGGGGTGTTTGGTTCCACGGACTAAAGTTTAGT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                                  --CCCTA      TGAATGCTTAGATACTAATTAAAAGTATTAAACATAGACTAATTACAAAATAAATTGCACAGATGGAGGCTAATTCTCGAGACAATCTATTAAGCCTCATTAATTCATGATTAGAACATATTTACCGTAGCATCA
  AGGGGGTGTTTGGTTCCACGGACTAAAGTTTAGT       TCACAT                                                                                                                                       
  ||||||||||||||||||||||||||||||||||       ||||||                                                                                                                                       C
  TCCCCCACAAACCAAGGTGCTTGATTTCAAATCA       TTGGTT                                                                                                                                       
AA                                  AGAACAG      TCAAATCAAGAACAGTGTAACAAATCTATGATTAATCCTCCTGATTTGTACTCGATTAATATTTTGGTTAACGTGTCTACCTCCGATTAAACGCTCTGCTTAGATAATTCGGATTAATCAGGTACTAAACTGTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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