Plant MITE

SE2730338

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3671
Setaria italica
SE2730338
hAT
Hat1
scaffold_2:27175211-27175412
ATTCTAGG
CTAGGCAGGGGCGGA

Secondary structure and sequence

TSD TIR

5'

3'

ATT     --          ACCAGGATGAACA           T      --T     AATA   -   ATTAAGGGCTAGAGCTAGAAATTAATGGTGATTTGAGGCTTTA
   CTAGG  CAGGGGCGGA             CCTCGGGGGGG GGGGGG   GGCTA    GTA GAG                                           
   |||||  ||||||||||             ||||||||||| ||||||   |||||    ||| |||                                            
   GATCT  GTCCCCGCCT             GGGGCCCCCCC CCCCCC   CCGAT    CCC CCG                                           
  G     TA          ------------A           -      CCC     ----   A   ACGTCGGGGGCTCTCGGACTAAAATGGACATTTTGTGACATCT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2730338

ATTCTAGGCAGGGGCGGAACCAGGATGAACACCTCGGGGGGGTGGGGGGTGGCTAAATAGTAGAGATTAAGGGCTAGAGCTAGAAATTAATGGTGATTTGAGGCTTTATCTACAGTGTTTTACAGGTAAAATCAGGCTCTCGGGGGCTGCAGCCACCCTAGCCCCCCCCCCCCCCCCCCGGGGATCCGCCCCTGATTCTAGG

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