SE2720340

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3673
  • Setaria italica
  • SE2720340
  • Mutator
  • M2
  • scaffold_5:22785123-22785427
  • ATGTATGAA
  • GGGAACGTATCTGGTGTAAACCATCTACCCCCGTGTAACCTTGGAAATTATGAATCAAGGTCACAAGATACTAATTCAATGAATAGGATTATTTTGCACTTAAGCTCCCCCACCCGCCGGCCAC

Secondary structure and sequence

TSD    TIR
5'



3' 
ATGTATGAA     C               C        CC                ----          GG         A  A   C    A       ------------                      A  -          TTTT  GATTTG
         GGGAA GTATCTGGTGTAAAC ATCTACCC  GTGTAACCTTGGAAAT    TATGAATCAA  TCACAAGAT CT ATT AATG ATAGGAT            TATTTTGCACTTAAGCTCCCCC CC CGCCGGCCAC    GC      
         ||||| ||||||||||||||| ||||||||  ||||||||||||||||    ||||||||||  ||||||||| || ||| |||| |||||||            |||||||||||||||||||||| || ||||||||||    ||       
         CCCTT TATAGACCACATTTG TAGATGGG  CACGTTGGAACCTTTG    ATACTTAGTT  GGTGTTCTA GA TAG TTAT TATCCTA            ATAAAACGTGAATTTGAGGGGG GG GTGGCCGGTG    CG      
AAGTATGTA     A               A        -A                ATAT          AT         C  C   A    C       ATCACCACCTTA                      G  T          -TTT  GGAGGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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